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Questions tagged [r]

R is a free, open-source programming language & software environment for statistical computing, bioinformatics, visualization & general computing. Please use minimal reproducible examples others can run using copy & paste. Show desired output entirely. Use dput() for data & specify all non-base packages with library(). Don't embed pictures for data or code, use indented code blocks instead. For statistics questions, use https://stats.stackexchange.com.

r
0 votes
0 answers
3 views

PRROC package - foreground background data - R

I'm currently trying to draw ROC and precision-recall curves for my model and struggling a bit to understand how to use my data for the PRROC package of R. I have a data frame containing different ...
user26317811's user avatar
0 votes
0 answers
5 views

mlr3: Extracting non-zero coefficient in lrn("surv.penalized")

I'm doing an ML study. I've used surv.penalized for lasso Penalized Cox Regression Learner, and get the non-zero coefficients. And it seems to work i.e. I do get some non-zero coefficients and the ...
Faiza's user avatar
  • 11
0 votes
0 answers
6 views

What is the difference between calling summary() and train_summary() on a nestcv.train object in the nestedcv package in R?

I am running a series of elastic net models with nested cross validation on my training data, using the nestedcv package in R. I am trying to extract performance metrics to compare models with ...
may.the.bee's user avatar
0 votes
0 answers
16 views

R, summarize dataframe based on certain columns and put 1 column values into list [duplicate]

I have a large dataframe and I need to summarize based on 3 columns (source, source_detail, information) and values in column year will be put into list, like in Table 2. My first code is data %>% ...
salmiah-ls's user avatar
0 votes
0 answers
17 views

Extracting matched data using overlap weights

I have generated overlap weights on R using weightit package, I generally fo regression using weights directly. But I want to extract the matched data according to overlap weights for demographic ...
ROHIT GANDUBOINA's user avatar
0 votes
0 answers
15 views

clmm function gives me an error "Error in x$code == 0L || action == "silent" : Error 'length = 2' in coercion to 'logical(1)'"

The following commands regarding the two types of models are executed in R model_4_clmm <- clmm(v27_3 ~ SEX_2 + AGE + PARTLIV_2 + EDULEVEL_2 + WORK_2 + ISCO08_2 + PARTY_LR_2 + v4_3 + gdp_per_capita....
Shiori Yoshioka's user avatar
1 vote
1 answer
24 views

How to read CSV file with all variables in character using `vroom`?

How to read 'myfile.csv' with all variables in character using vroom ? library(vroom) 'Below code can't work input_file_2<- vroom('myfile.csv',colClasses = 'character')
anderwyang's user avatar
  • 2,185
1 vote
0 answers
23 views

Convert ordinal word string to ordinal number string? [duplicate]

Suppose I have a vector containing ordinal number words as strings in R: ordinal_words<-c("FIRST COMPANY", "BAKERY FIFTH AVENUE", "WEST FORTIETH WAY") I would like ...
James Rider's user avatar
0 votes
0 answers
35 views

How do I order a barchart, but not by ascending or descending order? [duplicate]

I am making a bar chart breaking down time spent at each activity level(high, medium, low, and total active times) for individuals recorded to be in different fitness levels. here is the code I am ...
gravyGus's user avatar
0 votes
1 answer
17 views

NA values when using avg_predictions() from marginaleffects with a flexsurv model

I'm unsure why I do not get standard errors or confidence intervals when I fit parametric survival models and compute the predicted mean survival times using the avg_predictions(). I tried using ...
Tony's user avatar
  • 13
0 votes
0 answers
22 views

Embedding a GGPlotly into Gatsby page

THE INTRO: I am trying to embed ggplotly graphs into a Gatsby webpage I am learning to create. After arguing back and forth with ChatGPT for a couple hours, I'm seeking out your knowledge. Here is at ...
Logan W.'s user avatar
0 votes
0 answers
17 views

How do I make sure my huxtable list maintains formatting when writing to docx in R/Quarto?

I am using huxtable in Quarto in R for a pretty complicated table, and I need to make sure I have running headers when I knit to word. The headers will have their own formatting that needs to be ...
Joann's user avatar
  • 33
0 votes
3 answers
63 views

Add values across dataframe columns

I have a dataframe where missingness in indicated by "Z" (there may also be some "z" and NA entries present in the data), and values are entered as characters ("0", "...
jlbro's user avatar
  • 1
1 vote
1 answer
44 views

Confused about lists in R?

I come from a Python background but have to learn R for a job, and I am confused about lists. I understand named lists can be (roughly) equivalent to Python dictionaries, and I can look up elements ...
nos codemos's user avatar
0 votes
0 answers
9 views

structure of multinomial model in mgcv

I am trying to model the proportions of a variable with four categories through time and at four different sites. Most sites have all four categories of the variable, but some sites only have three ...
tnt's user avatar
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