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Journal Article

Building Phylogenetic Trees From Genome Sequences With kSNP4

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Barry G Hall and Jeremiah Nisbet
Molecular Biology and Evolution, Volume 40, Issue 11, November 2023, msad235, https://doi.org/10.1093/molbev/msad235
Published: 09 November 2023
Journal Article

Beginner's Guide on the Use of PAML to Detect Positive Selection

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Sandra Álvarez-Carretero and others
Molecular Biology and Evolution, Volume 40, Issue 4, April 2023, msad041, https://doi.org/10.1093/molbev/msad041
Published: 25 April 2023
Journal Article

Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST

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Simon Dellicour and others
Molecular Biology and Evolution, Volume 38, Issue 8, August 2021, Pages 3486–3493, https://doi.org/10.1093/molbev/msab031
Published: 02 February 2021
Journal Article

HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations

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Matthew L Bendall and others
Molecular Biology and Evolution, Volume 38, Issue 4, April 2021, Pages 1677–1690, https://doi.org/10.1093/molbev/msaa315
Published: 26 December 2020
Journal Article

Estimating Pangenomes with Roary

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Farrah Sitto and Fabia U Battistuzzi
Molecular Biology and Evolution, Volume 37, Issue 3, March 2020, Pages 933–939, https://doi.org/10.1093/molbev/msz284
Published: 17 December 2019
Journal Article

Bayesian Estimation of Past Population Dynamics in BEAST 1.10 Using the Skygrid Coalescent Model

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Verity Hill and Guy Baele
Molecular Biology and Evolution, Volume 36, Issue 11, November 2019, Pages 2620–2628, https://doi.org/10.1093/molbev/msz172
Published: 31 July 2019
Journal Article

Evolutionary Modeling in SLiM 3 for Beginners

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Benjamin C Haller and Philipp W Messer
Molecular Biology and Evolution, Volume 36, Issue 5, May 2019, Pages 1101–1109, https://doi.org/10.1093/molbev/msy237
Published: 24 December 2018
Journal Article

Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent

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Tomáš Flouri and others
Molecular Biology and Evolution, Volume 35, Issue 10, October 2018, Pages 2585–2593, https://doi.org/10.1093/molbev/msy147
Published: 23 July 2018
Journal Article

Estimating TimeTrees with MEGA and the TimeTree Resource

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Beatriz Mello
Molecular Biology and Evolution, Volume 35, Issue 9, September 2018, Pages 2334–2342, https://doi.org/10.1093/molbev/msy133
Published: 21 June 2018
Journal Article

Bootstrap and Rogue Identification Tests for Phylogenetic Analyses

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Claudia Augusta de Moraes Russo and Alexandre Pedro Selvatti
Molecular Biology and Evolution, Volume 35, Issue 9, September 2018, Pages 2327–2333, https://doi.org/10.1093/molbev/msy118
Published: 07 June 2018