Changeset 700339

Timestamp:

04/19/2013 02:30:05 PM (11 years ago)

Author:

emirpprime

Message:

Initial Commit

Location:

pubmed-publist/trunk

Files:

• includes/admin.php (modified) (4 diffs)
• includes/core.php (modified) (6 diffs)
• pm_cache.xml (added)
• pm_publist.php (modified) (1 diff)
• pm_pubmedrequest.php (modified) (8 diffs)
• readme.txt (modified) (7 diffs)

pubmed-publist/trunk/includes/admin.php

@@ -4 +4 @@
  **/
 
+
 //TODO: Add Purge cache buttons / functions.
 //TODO: Add cache settings
 //TODO: Add PMID exclude setting.
 
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+
 /* settings link in plugin management screen */
 function pm_pubmed_settings_link( $links ) {
@@ -132 +135 @@
             if(isset($key)) {
                 $val = trim(wp_kses($val, ''));
+
             } // end if
         } // end foreach
@@ -139 +143 @@
             update_option('pm_publist_settings', $input);
         }
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         return $input;
     }
@@ -149 +163 @@
     }
     public function pm_publist_create_searchString_field($int){
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         $options = get_option('pm_publist_settings');
         ?><textarea style="width:100%;" rows="5" id="searchString<?php echo $int;?>" name="array_key[searchString<?php echo $int;?>]"><?php echo $options['searchString'.$int];?></textarea><?php
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+
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     }
     public function pm_publist_use_info(){

pubmed-publist/trunk/includes/core.php

@@ -29 +29 @@
     $total = $show+$extra;
 
+
     $transient = 'pm_pubmedlist'.$show.$extra.$class.$layout;
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     $pubs = get_transient( $transient );
     if ( false === $pubs ) {
@@ -170 +174 @@
 
             $xmlCache = pm_publist_DIR.'pm_cache.xml';
+
             //TODO: Sort caching out. Remove age chack from pubmedrequest.php and ue just this???
             //Easier to get var from settings here.
+
+
             $xmlcache_time = 60*60; // 1 hour
             $timedif = @(time() - filemtime($xmlCache));
@@ -193 +200 @@
                         return false;
                     } else {
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                         $strings = get_option('pm_publist_settings');
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                         $data = http_build_query($strings);
 
@@ -224 +242 @@
         ////Create page
         $pubs = '<ul class="pm_publist '.$class.'">'.implode($lmbpubs[0]).'</ul>';
+
         global $show;
         global $total;
         if($show != $total) {
+
+
+
             //TODO: Add CSS / JS / Shortcode for this:
             //$pubs .= do_shortcode('[toggle title="More papers"]<ul class="'.$class.'>'.implode($lmbpubs[1]).'</ul>[/toggle]');
@@ -232 +254 @@
         };
 
+
         //for next time write transient cache file.
         //but only if no error (basic check using length)
@@ -237 +260 @@
         if (strlen($pubs) > 500){
             set_transient($transient, $pubs, 60*30);
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         }
     }

pubmed-publist/trunk/pm_publist.php

@@ -3 +3 @@
 Plugin Name: PubMed Publist
 Description: Shortcodes to display a list of publications from PubMed
+
 Version: 0.9.1
+
+
+
 Author: Phil Banks
 */

pubmed-publist/trunk/pm_pubmedrequest.php

@@ -2 +2 @@
 ////If Cache is good - use it
 //define some variables.
+
 //TODO: Use options to set this cache time
 //TODO: Check there isn't a WP function for writing to disk. Problems on some hosts???
+
+
 $cache_time = 60*60*2; // 2 hours
 $cache_file = dirname(__FILE__).'/pm_cache.xml';
@@ -14 +17 @@
 else {
         $nodes = array();
+
         if(isset($_POST["searchString1"])) {
             $search1 = 'http://www.ncbi.nlm.nih.gov/pubmed?term='.$_POST["searchString1"].'&report=xml';
@@ -40 +44 @@
 
         //get PubMed data as XML using parallel cURL requests for speed.
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         $node_count = count($nodes);
         $curl_arr = array();
@@ -59 +94 @@
 
 
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         //function to clean PubMed data so it is valid XML.
         function cleanPubmed($dirtyPubmed) {
@@ -71 +110 @@
             $query = array();
             foreach ($xml1->PubmedArticle as $paper) {
-                $query[] = sprintf('(MedlineCitation/PMID != %s)',$paper->MedlineCitation->PMID);
+            $query[] = sprintf('(MedlineCitation/PMID != %s)',$paper->MedlineCitation->PMID);
             }
             $query = implode('and', $query);
@@ -77 +116 @@
             $xmlClean = '<Document>';
             foreach ($xml2->xpath(sprintf('PubmedArticle[%s]', $query)) as $paper) {
-                $xmlClean .= $paper->asXML();
+            $xmlClean .= $paper->asXML();
             }
             $xmlClean .= '</Document>';
@@ -103 +142 @@
 
 
+
         //Loop through set nodes and clean/convert
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+
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         for($i = 0; $i < $node_count; $i++) {
             $num = $i+1;
@@ -111 +154 @@
             ${"xml$num"} = new SimpleXMLElement(${"search$num"});
         }
+
         //Loop through nodes and dedupe/merge
+
+
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         $output = $xml1;
         if ($node_count > 1) {
             for($i = 0; $i < $node_count-1; $i++) {
                 $num = $i+2;
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+
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+
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                 ${"xml$num.clean"} = dedupeXML($output,${"xml$num"});
                 $output = mergeXML($output,${"xml$num.clean"});

pubmed-publist/trunk/readme.txt

@@ -8 +8 @@
 License URI: http://www.gnu.org/licenses/gpl-2.0.html
 
+
 
 Simple shortcode to get and display latest publications from PubMed using a PubMed search URL(s).
 
 
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 == Description ==
 
@@ -18 +23 @@
 The shortcode accepts arguments to set how many papers are displayed, apply classes for custom styling, and choose from two layout options.
 
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 = Roadmap =
@@ -26 +37 @@
 * Add JS for show/hide extra results on front-end
 
+
 
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 == Installation ==
 
@@ -35 +49 @@
 1. Or use `<?php do_shortcode('recentpublications'); ?>` in your templates
 
+
 
+
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 == Frequently Asked Questions ==
 
@@ -44 +61 @@
 = Can I contribute to the plugin / suggest a change? =
 
+
 Please do! [The project is hosted on GitHub here](http://github.com/emirpprime/PubMedPublist).
 
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 == Screenshots ==
@@ -54 +75 @@
 1. Settings screen
 
+
 
 == Changelog ==
@@ -62 +84 @@
 
 = 0.9 =
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 * Initial Beta Release