STOmics

🌿🔬 Calling All Botanists! Join the 1st workshop focusing on spatial and single-cell technologies applications in plant research at #IBC2024. 🌱✨   Workshop title: Spatiotemporal and Single-cell Multi-Omics in Plants 🗓 Date: July 21st, 2024 📍 Location: Madrid, Spain 🕒 Time: 14:00-17:00 (Madrid, Spain time)   During the workshop, scientists will showcase how cutting-edge spatial and single-cell multi-omics technologies empower their plant research. STOmics FAS/BD Javier Batista Perez will give a talk titled Stereo-seq: Unleashing the total RNA spatial multi-omics profiles for all sample species. Know now about IBC2024 workshops: https://lnkd.in/gkCTphJY *The workshop is organized by STOmics users.   STOmics offers an advanced spatiotemporal multi-omics platform, enabling unbiased discovery to answer biological questions in scientific research as clinical applications.   Stereo-seq is the only spatial technology across the globe capable of accessing the whole transcriptome at true single-cell resolution, with subcellular data achieved through Ultra-HD resolution, and field of view options over 160 square cm.   Know more about STOmics https://en.stomics.tech/

Last call for STOmics Webinar! Starting in 4 hours!   Together with Pasteur Institute, STOmics will hold a webinar to introduce Stereo-seq technology updates and showcases in neuroscience.   Dr. Javier Batista Perez will talk about “Unleashing the total RNA spatial multi-omics landscapes for better insights into spatial biology“ to introduce the new powerful solution Stereo-seq OMNI for FFPE samples.   Dr. Longqi Liu will share the new research updates in brain science. His sharing topic is “High-Resolution Panoramic Spatial Transcriptomics for Mapping Brain Cell Atlases”.   Key highlights: -  Through STOC-Neuro and the China Brain Project (MBCP), Dr. Liu and his collaborators have established a global collaborative network for brain analysis based on cellular and spatial multi-omics. - By constructing extensive spatiotemporal atlases of brain cells in humans, non-human primates, mammals, and lower organisms, they investigated the cellular-resolution structure and function of the brain, mechanisms of cellular changes in pathological states, regulation of cell fate during development, and changes in cell types during species evolution. -  They have developed related brain atlas databases, providing valuable resources to facilitate global data sharing and collaboration in brain research.   Don’t miss this opportunity to stay updated on the latest advancements in Stereo-seq technology and neuroscience achievements.   Time: 2 p.m., July 4th, 2024 (GMT +2) Online link : https://bit.ly/4eS2pHy   No registration is needed.   Know more about STOmics: https://en.stomics.tech/ #STOmics #Stereoseq #neuroscience #spatialbiology

The recent Nature Methods publication, “Deciphering spatial domains from spatial multi-omics with SpatialGlue”, introduced SpatialGlue, a graph neural network model with a dual attention mechanism that facilitates the integration of multi-omics data.  https://lnkd.in/g6-4SWww The model’s versatility was prominently displayed through its application to a variety of modalities, including spatial transcriptome-proteome and spatial transcriptome-epigenome (ATAC-seq and CUT&Tag) datasets. Across these benchmarks, SpatialGlue outperforms state-of-the-art models in accurately identifying histologically relevant spatial domains to uncover biologically meaningful complexities. The mouse thymus dataset generated by STOmics Stereo-CITE was used to benchmark SpatialGlue. Stereo-CITE integrates Stereo-seq with the Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) technology, enabling researchers to simultaneously detect the whole transcriptome and up to 100+ plex proteins on the same tissue section. By incorporating both the transcriptomic and proteomic modalities from Stereo-CITE, SpatialGlue was able to cleanly demarcate the key thymus cortical layers and the corticomedullary junction with consistently superior performance across all four mouse thymus replicate sections. The Stereo-CITE dataset effectively demonstrated SpatialGlue’s capability in integrating multi-omics data to reveal detailed histological structures. Learn more about STOmics Stereo-CITE https://lnkd.in/ggCBDBvU #STOmics #Stereoseq #StereoCITE#bioinformatictools #spatialbiology #spatialomics

The newly published paper in Nature titled "Multiscale topology classifies cells in subcellular spatial transcriptomics" proposed “a multiscale approach to automatically classify cell types at subcellular level using both transcriptomic information and spatial context” as described. The mathematical tools, topological automatic cell type identification (TopACT), and multiscale approach using multiparameter persistent homology (MPH) were validated on both targeted and whole-transcriptome spatial platforms which improved cell classification and morphology for human kidney tissue and pinpointing individual sparsely distributed renal mouse immune cells without reliance on image data. Stereo-seq, the array-based whole-transcriptome spatial technology, was used in this paper to verify the mathematical tools. Stereo-seq offered down to 0.5 μm resolution data. By integrating TopACT with MPH landscapes, scientists showed the spatial arrangement of glomerular immune cells in lupus nephritis, demonstrating the effectiveness of the topological approach in quantifying and elucidating tissue organization. Learn more about the paper: https://lnkd.in/eqVyMPcR STOmics provides nanoscale resolution and a large field-of-view spatial multi-omics platform to the market. STOmics welcomes users to drive the spatial biology research/application together based on Stereo-seq technology advancements. Now STOmics offers multiple solutions, Stereo-seq transcriptomics solution, Stereo-seq transcriptomics mIF solution, Stereo-seq transcriptomics H&E solution, Stereo-seq large chip design, Stereo-CITE proteo-transcriptomics solution, Stereo-seq OMNI for FFPE solution. More about STOmics Stereo-seq solutions: https://lnkd.in/grNpf6bT #spatialbiology #bioinformatics #nature #STOmics #Stereoseq #spatialtranscriptomics

📢 **Join Us at VIB Spatial Omics Conference 2024** 📢   We are thrilled to invite you to our exclusive workshop:   Stereo-seq: Explore Spatial Biology as Never Before!   🗓  Date: 2024/6/14  🕒 Time: 13:00-13:45  📍 Location: Concert Hall   What to Expect: - Introduction to Stereo-seq: Dr. Jia Hui KHOO, STOmics Field Application Scientist, will introduce how Stereo-seq technology advances in spatial technologies, and the new FFPE solution, Stereo-seq OMNI. - Expert Insights: Hear from Prof. Chris Marine, Science Director of VIB Center for Cancer Biology, as he will showcase how Stereo-seq technology empowers his research in melanoma.   📌 Don't miss this opportunity to learn the advanced spatiotemporal multi-omics platform, Stereo-seq, which enables unbiased discovery to answer biological questions in scientific research as clinical applications.   Please talk to our experts at MGI booth #1 for more information.   STOmics website: https://en.stomics.tech/   We look forward to seeing you there!   #Workshop #Conference #Technology #Innovation #Networking #STOmics #Stereoseq #spatialbiology #spatialtranscriptome #FFPE

 Calling all attendees of the WEHI Spatial Technology Symposium 2024! 🌟 Join us for an exciting sharing of Dr. Chenchen Zhu from Stanford University as he showcases how his team used single-cell spatial transcriptomics technology - Stereo-seq on human intestine FFPE samples. Don't miss his "Understanding Human Intestine Using Single-Cell Spatial Transcriptomics" talk starting at 2:10 p.m. on June 6th ( AEST). See you there! #SpatialTechSymposium #StereoSeq #WEHI2024 #STOmics

Do not miss this opportunity to learn more about #STOmics Stereo-seq OMNI for FFPE solution. We will introduce Stereo-seq OMNI in the talk at 12:20 p.m. on June 6. There are also posters addressing how scientists used Stereo-seq solutions in their research. See you at the 14th #SgSI Annual Symposium 2024.

We are excited to invite you to our upcoming webinar, “Exploring with Stereo-seq OMNI“, scheduled for May 28, 2024, from 3:00 p.m. to 3:30 p.m. (GMT+8). This informative and engaging session will provide valuable insights into STOmics’ new product solution for FFPE samples—Stereo-seq OMNI—and help you discover your research potential with these innovative products.   Why Attend? - In-Depth Knowledge: Gain a deeper understanding of how Stereo-seq OMNI can help you extract more information from your FFPE samples through its unique technological advancements. - Interactive Q&A: Have your questions answered in real-time during our interactive Q&A session. - Intensive Knowledge Sharing: The webinar only takes 30 minutes (20 minutes sharing + 10 minutes Q&A) to provide firsthand information about Stereo-seq OMNI.     **Webinar Details: - **Topic: Exploring with Stereo-seq OMNI - **Date: May 28th, 2024 - **Time:3:00 p.m. to 3:30 p.m. [GMT +8] - **Duration: 30 minutes - **Platform: Zoom   **How to Register:** Click the link below to reserve your spot: https://lnkd.in/gpseBa-z   You can register now to secure your place and make sure you don't miss out on this valuable opportunity.   If you have any questions or need further information, please feel free to contact us at info_global@stomics.tech #STOmics #Stereoseq #FFPE #spatialtranscriptomics #spatialbiology #webinar

Wrapping up our #AACR events with a bang! A huge thank you to everyone who joined us contributed and made our event such a success. It's been an incredible journey connecting, sharing insights, and building relationships. Stay tuned for more exciting updates and future events! Don’t forget, Stereo-seq OMNI, STOmics solution for FFPE samples, is open for pre-order! You will enjoy a limited early bird discount for your order! Contact us for more information: https://lnkd.in/gRfwykPW   See you all next year!

STOmics Proteo-Transcriptomics solution – Stereo-CITE is officially launching today! Combined with Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq), STOmics Stereo-CITE Proteo-Transcriptomics Set is intended for simultaneous detection of the whole transcriptome and high-plex protein on the same tissue section. Stereo-CITE inherits the true single-cell resolution of Stereo-seq for both transcriptome and protein analysis. It supports 100+ plex proteins with antibody combinations of your choice from in-house validated vendor. Updated software suites enable you to discover spatial biology knowledge with multiplexed tissue images.   Stereo-CITE exemplifies the advantages of combining diverse omics data to achieve a more comprehensive understanding of biological systems. Dive more into Stereo-CITE: https://lnkd.in/g4XjHM7a   For more details or quotations, please contact STOmics® local representatives or email info_global@stomics.tech. #STOmics #Stereoseq #spatialtranscriptomics #spatialomics